FEATURED TECHNOLOGY
Advanced Infrastructure for Stem Cell Research
The Stem Cell Core Facility provides state-of-the-art infrastructure to support basic, translational, and regenerative medicine research. Our platform is designed to enable high-quality hiPSC maintenance, gene editing, molecular validation, and advanced imaging within a rigorously controlled environment.
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🔬 Advanced Imaging & Cellular Characterization
High-resolution imaging platforms support morphological analysis, pluripotency validation, and immunofluorescence studies.
ðŸÇÀ Impact: Imaging platforms that directly support high-impact publications.
🔹 Olympus IX83 Microscope
High-resolution, fully automated observation of live and fixed samples across multiple dimensions (X, Y, Z, and time), supporting stem cell, organoids, embryos, and tissue research.


Key Features
- Z-Stack Imaging: Acquire images at multiple focal planes for 3D reconstruction
- Automatic Focusing: Multiple objective lenses for precise, reproducible imaging
- Time-Lapse Acquisition: Continuous monitoring of dynamic processes in live cultures, organoids, embryos, and organotypic slices
- Multimodal Imaging: Bright field, phase contrast, and fluorescence (DAPI, FITC, TRITC)
- Fast Image Acquisition & Overlay: View multiple fluorescence channels simultaneously
- Multipoint Scanning: Automated imaging at multiple locations for quantitative, reproducible datasets
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🔹 EVOS M7000 Microscope
Fully automated fluorescence and transmitted-light imaging for live cells, organoids, embryos, tissue slices, and more. Designed for high-content stem cell research, these platforms combine speed, precision, and ease of use.


Key Features
- Automated Multichannel Fluorescence Imaging: Rapid, reproducible immunofluorescence data acquisition across multiple channels
- High-Quality Optics: 5-position objective turret with 4-color LED fluorescence and transmitted light channels
- Dual Camera System: 3.2 MP CMOS color and black/white cameras for bright-field and fluorescence imaging
- Automated Imaging: Fully automated X/Y scanning stage, autofocus, exposure control, and objective/light cube switching
- High-Speed Acquisition: Z-stack, tile-stitching, 2D/3D deconvolution, and time-lapse imaging for long-term experiments
- Environmental Control: Temperature, gas, and humidity regulation for live cell imaging
- Advanced Analysis: Optional Cellesteâ„¢ software for cell segmentation, quantification, and visualization
- Flexible Workflow Programming: Well-plate scanning, multipoint time-lapse experiments, and montage/area scans in Z-stack or time-lapse modes
- Smart Illumination: LED technology ensures consistent fluorescence excitation with minimal phototoxicity
- User-Friendly: Intuitive interface for reliable operation across research groupsÌý
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🔹 Olympus Provi-scanner
Digital whole-slide scanning for histological and immunostained samples.

Key Features & Benefits:
- Automated Slide & Culture Scanning: Rapid acquisition of multiple points in culture vessels or slides with minimal hands-on time.
- Non-Invasive Live Monitoring: Track cell health, confluency, and growth dynamics without staining or disrupting cultures.
- Remote Alerts: Receive notifications when cultures approach confluency and are ready for passage.
- High-Resolution Imaging: Bright-field, phase contrast, and fluorescence (DAPI, FITC, TRITC) for publication-quality data.
- Multichannel & Z-Stack Imaging: Capture multiple fluorescent markers, tile-stitch large areas, and generate 3D reconstructions.
- Data Management & Analysis: Easily store, reuse, transfer, and compare data across experiments and conditions; integrates with downstream analysis software.
- Versatile Sample Support: Histological sections, immunofluorescence slides, organoids, and tissue slices.
With fully automated imaging and live culture monitoring, the Olympus Provi-scanner enables quantitative, reproducible, and high-content data collection, empowering researchers to accelerate stem cell research with confidence.
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🧬 Gene Editing & Genetic Engineering
Precision Genome Manipulation in hiPSCs, derived-Stem Cells and Primary Cell Cultures.
ðŸÇÀ Impact: These systems enable generation of isogenic lines, knockouts, knock-ins, and reporter cell lines.
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🔹 Neon NxT Electroporation System
“Optimized for hiPSCs, primary cells, and other hard-to-transfect cell types"

- High Transfection Efficiency
- Customizable Protocols: Adjustable voltage, pulse width, and number of pulses for precise control
- Rapid & Reproducible: Consistent results across experiments and multiple users
- Versatile Applications: Supports CRISPR/Cas9 editing, plasmid delivery, RNA transfection, and protein introduction
- Minimal Cytotoxicity: Optimized settings reduce cell stress and maintain pluripotency
- Multi-User Ready: Reliable platform for academic core facilities and collaborative projects
- Seamless Workflow Integration: Compatible with downstream molecular assays, imaging, and functional studies
- Accelerates Research: Enables efficient genetic modification to support studies in differentiation, disease modeling, and regenerative medicine
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🔹 Nucleofector 2b
Proven platform for CRISPR/Cas9 delivery and stable genome editing workflows.

- Efficient transfection of hard-to-transfect cell lines and primary cells.
- Easy adjustment and configuration of parameters.
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🧪 Molecular Characterization & Validation
From DNA to Functional Assays
ðŸÇÀ Impact: ÌýThese tools support pluripotency validation, differentiation markers, and genetic screening workflows.
🔹Real-Time PCR System
- QuantStudio 3 Real‑Time PCR System
- QuantStudio 5 Real‑Time PCR System

- Sensitive and Accurate Quantification: Detect and quantify DNA and RNA from stem cells, hiPSCs, and differentiated derivatives with high precision
- Fast & Reliable: Rapid cycling and optimized protocols for time-efficient gene expression and genomic assays
- Multiplexing Capability: Simultaneously measure multiple targets using fluorescent probes for complex stem cell pathways
- Wide Dynamic Range: Detect low-abundance transcripts, crucial for rare stem cell populations and differentiation studies
- Reproducible Results: Standardized workflows ensure consistency across experiments and users
- Easy Data Analysis: Integrated software for relative quantification, absolute quantification, and melt curve analysis
- Versatile Applications: Gene expression profiling, pluripotency marker validation, CRISPR genotyping, and stem cell differentiation studies
- Integration with Core Workflows: Compatible with upstream sample prep (RNA extraction, cDNA synthesis) and downstream validation assays
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🔹Standard Thermocyclers
- ProFlex PCR System
- Prime PCR System

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- Flexible Thermal Cycling: Multiple blocks and customizable profiles allow simultaneous amplification of different targets, ideal for multi-sample stem cell experiments
- High Precision & Accuracy: Uniform temperature control ensures reproducible amplification for DNA, cDNA, and genomic assays
- Multiplex Capability: Compatible with multiplex PCR assays for efficient detection of multiple gene targets in stem cells
- Rapid Cycling Options: Optimized protocols reduce experiment time without compromising data quality
- User-Friendly Interface: Intuitive software simplifies programming, monitoring, and data management
- Versatile Applications: Genotyping, pluripotency marker validation, CRISPR validation, and differentiation studies in hiPSCs and other stem cell lines
- Integration with Core Workflows: Works seamlessly with RNA/DNA prep, real-time PCR validation, and downstream molecular assays
- Reproducible Results Across Users: Ideal for multi-user core facilities requiring consistent and reliable data
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🔹PCR Hood for DNA/RNA workflowsÌý

- Preparation of DNA and RNA samples for PCR, qPCR, and RT-PCR
- Setting up gene expression assays and genotyping workflows
- Minimizing contamination risk during sensitive nucleic acid handling
- Sample preparation for CRISPR validation and molecular cloning
Critical for maintaining data integrity in gene editing, pluripotency validation, and differentiation assays
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🔹 Lucetta 2 Luminometer

- Cell proliferation Assay.
- Cytotoxicity Assay.
- Luciferase reporter gene assay.
Mycoplasma Detection Assay.
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🧫 Controlled Stem Cell Culture Environment
Reliable & Sterile Culture Infrastructure.
ðŸÇÀ Impact: This infrastructure ensures optimal sterility, cell viability, and reproducibility.
- Class II Biosafety Cabinets (5)
- HERAcell Vios 160i Incubathors
- Ultra-Low Temperature (ULT, -80*C) FreezerÌý
- Microcentrifuges
- Water & Bead Baths
- Electronic Multichannel Pipettes
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🔹 Ultra‑Low Temperature (ULT) Freezer

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🔹Microcentrifuges

- Separation of cells, supernatants, and subcellular components
- Preparation of samples for PCR, RNA/DNA extraction, and enzymatic assays
- Pellet formation for cell washing, media changes, and differentiation protocols
Processing of small volumes for downstream analytical assays.
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🔹Water bath & ÌýBeads bath
Water Bath

- Rapid thawing of cryopreserved cells and cryovials
- Warming media, reagents, and supplements
- Enzymatic incubations and enzyme activation steps
Temperature-sensitive molecular reaction
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Bead Bath (Dry Bath)

- Safe, water-free alternative for thawing cryovials
- Warming media and reagents without contamination risk
- Incubation of samples in tubes
- Supporting standardized molecular and enzymatic workflows.
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🔹 Electronic Multichannel PipettesÌý
Precision, Automation, and High-Throughput Performances.

- High-throughput stem cell assays
- Standardized differentiation workflows
- CRISPR screening plate preparation
- Molecular assay reproducibility
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🧬 Specialized hiPSC or derived-Stem Cells & WorkflowSupport
"Dedicated infrastructure to ensure optimal viability, morphology control, and reproducibility in stem cells workflows"
🔹 Sterile Dissection Hood + Olympus CKX53
For Colony picking/cleaning, stem cells picking/cleaning & morphology monitoringÌý

- 4x, 10x, 20x, and 40x magnification.
- Bright field,Ìý
- Phase contrast,Ìý
- Fluorescence (DAPI, FITC, TRITC).
- Quickly acquisition and overlapping of images to view samples with multiple fluorescent lenses.Ìý
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🔹 Automated Cell Counters:
- Countess II FL
- Countess 3

- Highly accurate and precise brightfield and fluorescence cell counting.
- Clump cell count.
- Automatic lighting and focus adjustment for optimal contrast and resolution.
- Automatic saving of cell counts and data.
- The software includes convenient built-in pre-dilution and cell-splitting calculators, especially for stem cell culture work.
Time to count two samples (sides A and B) ~1 minute
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🔹 Sterilization Hood (UVP) + "Cell Culture Marker"Ìý
🔹 Automated Cell Thawing System (ThawSTAR CFT2)Ìý

âž¡ Standardized defrosting
âž¡ Reduces variability. Reproducible thawing profiles using a standardized thawing method.
âž¡ Ideal for cell banks
âž¡ Eliminate the risk of contamination
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🧫 ÌýControlled Stem Cell Culture Environment
Equipment that supports cell maintenance, functional assays, and experimental stability.
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🔹 ThermoMixer C (Interchangeable Thermoblock – Eppendorf)
** SmartBlocks for 15 ml tubes and plates

âž¡ Sample preparation
âž¡ Short incubations
âž¡ Enzyme assays
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🔹 MicroPlate Centrifuge

âž¡ Rapid plate centrifugation
âž¡ ELISA, plate assays, PCR plates
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🔹 CO2 Orbital Shaker Incubator

âž¡ Suspension cultures
âž¡ Organoids
âž¡ Differentiation under shaking.
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🔹 Microsample Incubator

âž¡ Controlled short incubations
âž¡ Rapid assays
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🔹 3D Orbital Mixer

âž¡ Gentle sample mixing
âž¡ Differentiation protocols
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Imaging Support Platforms/ Training Platforms
🔹 Evos XL Core Microscopes

âž¡ Routine Microscopy. Objectives at 4x, 10x, 20x, and 40x.
âž¡ Daily Morphological Assessment
âž¡E²¹²õ²â image acquisition and storage during cell culture work.
âž¡ User Training
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Biosafety cabinets with or without lab supplies and consumables.
For questions about lab equipment,ÌýpleaseÌýcontact the Center!
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Videos:Ìý
Olympus IX83 Microscope
- IX83: Trans-mesenteric Migration of Enteric Neural Crest Derived Cells (ENCCs)Ìý
- IX83: Brain Slice Culture Glia CellÌý
- ÌýIX83: Real-time Imaging for Ring1BYFP/YFP MEÌý
- ÌýIX83: Synthetic ERK Activity Propagation by a Light-Switchable SystemÌý
- ÌýIX83: Light-induced Oscillatory/Sustained Expression of Ascl1 in Neural Progenitor Cells
- IX83 Inverted Microscope: Adding Oil to the ObjectiveÌý
- IX83 Inverted Microscope: Loading a Sample Slide on the Stage
- IX83 Inverted Microscope: Focusing and Positioning the Stage Using the U-MCZ Remote Controller
Neon NxT Electroporation System
Video:Ìý
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